Latent Dirichlet Allocation modeling of environmental microbiomes
Fig 3
Topic abundance weighting for the treatment and species types.
All topics to the left of topic 9 are associated with Acropora cervicornis species. All topics to the right of topic 8 are associated with Acropora palmata species. All topics below topic 11 are associated with Control treatment whereas all topics above topic 15 are associated with Inoculated (diseased or visually unaffected) treatment. Topics in color are topics associated with an experimental outcome. Topic 20 is associated with Low disease susceptibility; topics 5 and 14 are associated with Medium disease susceptibility; topics marked with triangle up symbols are associated with High disease susceptibility.