Tissue Forge: Interactive biological and biophysics simulation environment
Fig 6
Molecular modeling and simulation with Tissue Forge.
A: Classes of bonded interactions, where a measured property of the bond (length l for Bonds, angle θ for Angles, and planar angle ϕ for Dihedrals) is used as input to a potential function. B: Detailed view of thymine (left) and adenine (right) molecules constructed from Tissue Forge objects. Bonds shown as green cylinders, angles as blue arcs, and dihedrals as gold planes. C: Real-time simulation of a cloud of thymine and adenine molecules interacting via long-range potentials in a neutral medium.