HiSV: A control-free method for structural variation detection from Hi-C data
Fig 3
Performance comparison of SVs callers.
(A) The precision and recall rates of SVs detected by HiSV, HiC_breakfinder, HiCtrans and HiNT-TL in the simulation sample at different sequencing depths. Black contours show harmonic means of precision and recall rates (F1-score). (B) The precise and recall rates of SVs detected by the above methods in HCC1954, K562 and T47D cell lines. (C) The number of validated SVs with different types detected by existing methods. (D) The number of different ranges of SVs detected by HiSV and HiC_breakfinder with validation by groundtruth.