DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes
Fig 5
Comparison of chromatin loops identified by DLoopCaller, HiCCUPS, Fit-HiC, and Peakachu in GM12878.
(a) Venn diagram of identified chromatin loops determined by DLoopCaller CTCF ChIA-PET, HiCCUPS, Fit-HiC, and Peakachu in GM12878. (b) APA plots for DLoopCaller CTCF ChIA-PET loops, HiCCUPS, Fit-HiC, and Peakachu in GM12878. (c) A visual example of identified loops by different models in a region. The black dots in the upper half of the three diamond-shaped graphs represent the chromatin loops identified by DLoopCaller, and the blue, green, and yellow dots in the lower half represent the chromatin loops identified by Peakachu, Fit-HiC, and HiCCUPS respectively.