Robust inference of population size histories from genomic sequencing data
Fig 9
Results of inference in the bottleneck followed by growth scenario for sample size 10 (Panel A) and 200 (Panel B).
We compare the inference of CHIMP, MSMC2, and Relate using a piecewise constant population size history with 19 change points. Truth shown in black. Solid lines are averages over 16 replicates and shaded areas indicate standard deviation. Mean signed error Δ(k) is shown in bottom plot and has been smoothed using moving average for visualization purposes, The integral ϕ is indicated in the legend. (*) For sample size 200, MSMC2 was run on 50 non-overlapping pairs.