Robust inference of population size histories from genomic sequencing data
Fig 3
Example trajectory of with the state denoted by tuples.
At t = 0 there are three lineages of type kab ancestral to both loci for their respective samples. The lineages split at ancestral recombination events and join at coalescence events where they find a common ancestor. The trajectory ultimately culminates in the state (1, 0, 0, 1), signifying that there is one lineage ancestral to both loci in all present-day samples, and that one recombination event occurred in this genealogy.