Base-resolution prediction of transcription factor binding signals by a deep learning framework
Fig 5
Performance comparison of FCNsignal and the competing methods on the six ATAC-seq datasets.
(A) The MSE and Pearsonr values for BPNet and FCNsignal. (B) The AUC and PRAUC values for LSGKM, DeepEmbed, DeopenBPNet, and FCNsignal. (C) The Pearsonr between predicted maximum signals and true maximum signals for MCF7 (Pearsonr: 0534) and IMR90 (Pearsonr: 0.556). For MCF7, the Pearnsonr for DNA sequences with low and high openness are 0.075 and 0.634 respectively. For IMR90, the Pearnsonr for DNA sequences with low and high openness are -0.054 and 0.693 respectively.