Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets
Fig 13
(A) Process to view segmentation quality in 3D on Morphonet.Segmentation quality results (VJI values) for a test stack (TS2-26h) from 5 pipelines displayed on Morphonet. Users can slice through each 3D stack in XYZ directions and check the property (here VJI values) for each cell in the interior layers of the tissue structure. For example, for each pipeline in the above figure, the left image shows the full 3D stack, and the right image shows the cross section of the same stack after slicing 50% in the Z direction. VJI values are projected as a “property” or color map on the cells. In this figure, a “jet” color map is used where red represents high, and blue represents low VJI values as shown in the color bars alongside.3D, three-dimensional; VJI, volume-averaged Jaccard index.