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Bayesian data assimilation for estimating instantaneous reproduction numbers during epidemics: Applications to COVID-19

Fig 6

Illustration of the hierarchical transition process and observation process.

The most recent infection that can be observed by Ct is at the time t* = td where d is a constant determined by the distribution of observation delay. Suppose Tφ is the length of the vector such that Ct is only relevant to Jt* and jt* only depends on Jt*−1 via the renewal process. Therefore, Tφ≥max(Tw, THd+1). The case that Tφ = THd+1 is depicted in this figure.

Fig 6

doi: https://doi.org/10.1371/journal.pcbi.1009807.g006