McComedy: A user-friendly tool for next-generation individual-based modeling of microbial consumer-resource systems
Fig 5
McComedy reproduces quantitative results of simulations by Momeni et al. [16].
The quantitative metrics were assessed for yeast cells grown on media supplemented with lysine and adenine (+ LA) and on media without these resources (- LA). A, B: Association index of the two cooperative strains ( with
) and the non-cooperators C←L in the original IBM and McComedy IBM, respectively. C, D: Abundance ratio between the cooperators
and the non-cooperators C←L in the original IBM and McComedy, respectively. Note the logarithmic scales of the vertical axes. Images A, C adapted from [16].