Sample size calculation for phylogenetic case linkage
Fig 5
Histogram of raw parameter error using substitution rate method.
Theoretical minus simulated parameter values for each genetic distance threshold in 10,000 simulations of varying substitution rate and reproductive number for a given sampling proportion (see Fig 4). Top row: theoretical minus simulated false discovery rate; middle row: theoretical minus simulated sensitivity; bottom row: theoretical minus simulated specificity. Colors correspond to sampling proportion as in Fig 4.