Efficient representations of tumor diversity with paired DNA-RNA aberrations
Table 4
There are six “core” target genes which appear in every minimal target covering of the colon samples. P(RNA) is the fraction of samples for which the indicated target gene is RNA-aberrant; P(RNA&upstreamDNA) is the fraction of samples for which the indicated target gene is RNA-aberrant and there exists an DNA-aberrant gene among its sources. P(upstreamDNA|RNA) is the fraction of the samples with the indicated gene RNA-aberrant for which at least one of its sources is DNA-aberrant.