On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
Fig 10
Estimated height and length for network A (see Fig 7), as a function of the number of sites.
Heights and lengths are measured in units of expected number of mutations per site. True values are given by the dashed horizontal lines. Two lineages per species were simulated. Constant sites are included in the analysis, and 20 replicates are considered for each simulation set up (criterion ESS > 200; θ ∼ Γ(1, 200), , r ∼ Beta(1,1),
for the priors, number of reticulations bounded by 2 when exploring the network space).