Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
Fig 8
Round 1: Benchmarking the AdaptiveOperatorSampler operator.
Top left, top right, bottom left: each plot compares the ESS/hr (±1 standard error) across two operator configurations. Bottom right: the effect of sequence length L on operator weights learned by AdaptiveOperatorSampler. Both sets of observations are fit by logistic regression models. The benchmark datasets are displayed in Table 5. The cat and quant settings are evaluated in S1 Fig.