AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses
Fig 9
Atoms and pseudoatoms used in the coarse-grained representation of RNA (upper left pane) and ligand molecules (upper right pane), an example of a ribonucleotide (guanosine monophosphate) in SimRNA representation (bottom left) and a small molecule—S-adenosylmethionine (bottom right) in the pharmacophore representation.