AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses
Fig 2
Comparison of the performance of nine scoring functions, expressed as the RMSD between the best-scored pose and the reference pose (left panel), best among the top three scored poses (S(3), middle panel), and best among the top five scored poses (S(5), right panel).
Additional rows represent the median and minimal values of RMSD obtained during docking. Each dot represents one complex from the testing set. Docking was performed using rDock with dock desolvation potential with the native conformation of a ligand as an input.