A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis
Fig 3
Naive sequence posterior probability logos.
The linearham-inferred (top) and ARPP-inferred (middle) amino acid naive sequence posterior probability logos for (a) the pruned PC64 dataset of 100 sequences and (b) the trimmed VRC01 alignment of 268 sequences. We also display the empirical sequence logo (bottom) for each dataset and highlight the inferred CDR3 regions (black lines).