Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data
Fig 8
The SCOPer algorithm can be run efficiently on multiple cores.
The speedup, defined as the time it takes the algorithm to execute with one processor divided by the time it takes to execute in parallel, was calculated for the integrated model for different numbers of processing cores. In each case, speedup was calculated as the average across 25 simulated datasets (with error bars showing the standard deviation). Evaluation was carried out on a Linux computer with a 2.20 GHz Intel processor and 32 GB RAM. The linear fit is shown by a dashed line, while the ideal speedup is shown by the dot-dash line.