Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease
Fig 7
Dimensions in GloVe embedding space correlate with some metabolic pathway annotations, but dimensions in PCA embedding space do not (A). Each column in each heat map represents a metabolic pathway from KEGG (e.g. ko00983). Each row is a dimension in either GloVe or PCA embedding space. Significant metabolic pathway correlations of the four properties strongly associated with IBD in both Halfvarson and AGP datasets (B). Each point represents a metabolic pathway, the x axis shows the pathway’s broad category, and the y axis shows the strength of the correlation.