Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis
Fig 6
Identified genes separating the MIRAC clusters 1, 15, and 22 of the Zeisel et al. [53] dataset.
(A) t-SNE scatter plot with color as MIRAC cluster labels and marker shape as compared or not compared. (B) t-SNE scatter plots of the compared clusters with color as log2(read count + 1) of the corresponding gene and marker shape as MIRAC clusters. (C) Transcription level heatmap of the top 100 important cluster separating genes in the compared cells, with rows as cells ordered by cluster labels and columns as genes ordered by importance. The color gradient is log2(clip(read count, 1, 100)), where the clip(read count, 1, 100) function changes any read count below 1 to 1 and above 100 to 100, in order to better compare genes at different transcription levels.