Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis
Fig 5
KNN rare transcriptomic profile detection on the Zeisel et al. [53] dataset.
(A) t-SNE scatter plot with colors labeling cell types and markers labeling common or rare transcriptomic profiles. 9.3% cells are marked as rare. (B) Pairwise cosine distance heatmap with left strip as MIRAC labels and upper strip as common or rare transcriptomic profiles labels. (C) Pairwise cosine distance heatmap with rare transcriptomic profiles removed.