A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks
Fig 12
Safety sets computed via RLFs.
(a),(b), Safety sets for the PTM cycle (Fig 6c). (a) The safety set corresponding to the rate-dependent RLF for the PTM cycle. It is the α-level set of V where α has been chosen such that the concentration of S does not exceed 2.5. (b) The safety set corresponding to the concentration-dependent RLF. The safety set has been chosen similarly to satisfy the same condition. (c),(d), Sub-levels sets for the safety sets corresponding to the rate-dependent RLF (7) for the double processive PTM cycle (Fig 8b). (c) The sublevel set (with [X2] = 0) of the α-level set of V where α has been chosen such that the concentration of E does not exceed 2.5 on the sublevel set. (d) Another sublevel set of the same set in (c) with [X2] = 0.5AU.