VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning
Fig 2
Summary of significant variant associations and prediction accuracies from 93 species-antibiotics combinations.
Both heatmaps display the counts of curated isolates by the combination of 9 bacterial species and 29 antibiotics from 13 drug categories. The boxes without a number indicates that no isolates were available for this particular bacterial species and antibiotic combination. A) the color of the boxes indicates the number of gene-antibiotic resistance associations with FDR adjusted p-values <0.05 from VAMPr association models, and the actual numbers are shown within the parenthesis; B) the color indicates cross-validated prediction accuracies from VAMPr prediction models, and the accuracies are shown within the parenthesis.