Fungal feature tracker (FFT): A tool for quantitatively characterizing the morphology and growth of filamentous fungi
Fig 8
Workflow of the mycelium characterization algorithm.
Original image (A). Binary image obtained by subtracting a gaussian-filtered version of the original image, applying morphological binarization, and applying a maximum area filter (B). Result of applying the Thinning function to the image in B (C). Mathematical graph obtained using the MorphologicalGraph function, in which nodes (blue) represent hyphal junctions/tips and edges (red) represent hyphae (D).