Hypergraph-based connectivity measures for signaling pathway topologies
Fig 7
STRING interactions within Reactome for (A) “combined score” interactions, (B) “experimental” interactions, and (C) “textmining” interactions.
The Venn diagram shows the overlap of interactions where the nodes appear in any Reactome pathway, appear in the same Reactome pathway, or are connected in the bipartite graph. The violin plot shows the distributions of interaction scores (which range from 1 to 1000) for different sets of interactions (median, percentiles, and Kruskal-Wallis p-values shown, where p < 2.2e − 16 is below the detection limit [43]). In Panel (A), the bottom violin plot shows the distributions of interaction scores for selected B-relaxation distance thresholds.