Multi-state design of flexible proteins predicts sequences optimal for conformational change
Fig 8
Average per-residue total energy score of the lowest ten percent scoring models for RECON MSD, SSD, and starting relaxed (Native) models.
One hundred simulations were performed for each group and the lowest ten total energy scoring models were used for the comparison. The total scores were normalized so that the calculated total score was divided by the number of residues within each model to obtain a mean residue score. For RECON MSD models, the total calculated score also had to be normalized by the number of states within each model. The violin plot width indicates the normalized energy score density of each group.