ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates
Table 1
Common genome analysis key metrics for processing and characterization steps analyzing a benchmark dataset comprising 32 Listeria monocytogenes isolates.
Minimum and maximum values for selected common genome analysis key metrics resulting from an automatic analysis conducted with ASA3P of an exemplary benchmark dataset comprising 32 Listeria monocytogenes isolates. Metrics are given for quality control (QC), assembly, scaffolding and annotation processing steps as well as detection of antibiotic resistances and virulence factors characterization steps on a per-isolate level.