ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates
Fig 1
The ASA3P workflow and incorporated third party software tools and databases.
The ASA3P workflow is organized in four stages (large white boxes, A-D) comprising per-isolate processing and characterization, comparative analysis and reporting steps (orange boxes). The processing stage A is mandatory whereas stage B and C are optional and can be skipped by the user. Each step takes advantage of selected third-party software tools (blue boxes) and/or databases (green ovals) depending on the type of provided input data at hand.