MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
Fig 4
Genome-browser shows MAPS-identified interactions anchored at Mtnr1a promoter from mESC H3K4me3 PLAC-seq data.
Anchor regions around Mtnr1a promoter are highlighted by yellow box (chr8:45,065,000–45,075,000, two 5Kb bins). The MAPS-identified interactions overlapping this anchor region are marked by magenta arcs. The black arrow points to the interaction verified in the previous publication [20] and the other end of the interaction is marked by magenta box. Additional interacting regions identified by MAPS are marked by grey boxes. No interaction is identified by hichipper anchored at this region from mESC H3K4me3 PLAC-seq data.