Model diagnostics and refinement for phylodynamic models
Table 1
Proportions of p-value less than 0.05 that indicate overall evidence against the null model in two scenarios: (1) fitting the correct model structures and (2) fitting the s-d-s M0 to data generated from a within-host-diversity model M1.
For scenario (2), five datasets are generated independently from M1 with a same set of parameter values (Models), which are used to reveal any consistent difference of the evidence of model mis-specification compared to scenario (1). Noted that in both scenarios, the (same) correct epidemic process component is fitted. is the subset of the full set of residuals
, associated with non-zero marks ΞΆk.