Model diagnostics and refinement for phylodynamic models
Fig 2
Empirical cumulative distribution functions of p-value obtained by applying the Anderson-Darling test to the subset of residuals with non-zero marks and to the full set of residuals (for simulations set 1 to set 5 in Scenario II where s-d-s model M0 is (inappropriately) fitted to data generated from a within-host-diversity model M1), see also Table 1.
Proportions of p-value less than 0.05 (indicated by colored text) in this case are consistently higher for the subset of residuals corresponding to non-zero marks (red text).