ReaDDy 2: Fast and flexible software framework for interacting-particle reaction dynamics
Fig 5
Reaction kinetics and detailed balance.
Concentration time series of a the reaction-diffusion system introduced in Sec. Performance with the reversible reaction A + B ⇋ C. Compared are cases with and without harmonic repulsion (6). Additionally we compare two different reaction mechanisms, the Doi reaction scheme and the detailed balance (iPRD-DB) method for reversible reactions. (a) 30% volume occupation and no interaction potentials. (b) 30% volume occupation with harmonic repulsion between all particles. (c) 60% volume occupation and no interaction potentials. (d) 60% volume occupation with harmonic repulsion between all particles.