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ReaDDy 2: Fast and flexible software framework for interacting-particle reaction dynamics

Fig 4

Speedup and efficiency.

Parallel speedup and efficiency of the benchmark system of Sec. Performance as a function of the number of cores using the machine described in Fig 3. (a) Speedup with different numbers of cores compared to one core. Optimally one would like to have a speedup that behaves like the identity (black dashed line). (b) Efficiency is the speedup divided by the number of threads, i.e., how efficiently the available cores were used.

Fig 4

doi: https://doi.org/10.1371/journal.pcbi.1006830.g004