Augmenting subnetwork inference with information extracted from the scientific literature
Fig 7
Precision-recall curves for HIV replication subnetworks with and without literature extracted genes and interactions.
The blue line represents results from the consensus network without GADGET or Literome augmentation. The red line represents results from the consensus network generated with GADGET genes augmenting the sources. The light blue line represents results from the consensus network generated with Literome interactions augmenting the network. The orange line represents results from the consensus network generated with both GADGET genes and Literome interactions augmenting the sources. The horizontal light green line in the figure represents the prevalence of known hits and interfaces in the background network.