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A multiscale model of epigenetic heterogeneity-driven cell fate decision-making

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Physiological and pathological cell fate reprogramming: A mathematical approach.

Reprogramming-like phenomena in response to damage signalling may constitute a reparative route through which human tissues respond to injury, stress, and disease via induction of a transient acquisition of epigenetic plasticity and phenotypic malleability. However, tissue regeneration/rejuvenation should involve not only the transient epigenetic reprogramming of differentiated cells, but also the committed re-acquisition of the original or alternative committed cell fate. Chronic or unrestrained epigenetic plasticity would drive ageing/cancer phenotypes by impairing the repair or the replacement of damaged cells; such uncontrolled phenomena of in vivo reprogramming might also generate cancer-like cellular states. Accordingly, we now know that chronic senescence-associated inflammatory signalling (SAIS) might lock cells in highly plastic epigenetic states disabled for reparative differentiation and prone to malignant transformation. We herein introduce a first-in-class stochastic, multiscale reduction method of combined epigenetic regulation (ER)-gene regulatory network (GRN) to mathematically model and computationally simulate how ER heterogeneity regulates the entry-exit mechanisms and kinetics of physiological and pathological cell fate reprogramming.

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doi: https://doi.org/10.1371/journal.pcbi.1006592.g001