scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
Fig 4
Screenshot of an HTML report created by scPipe for the mouse blood cell dataset.
This report organises the output of scPipe, including run parameters and QC metrics and also generates basic dimension reduction plots of the data. Such reports provide a convenient format for communicating basic QC information to collaborators to help them evaluate the overall quality of an experiment.