scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
Fig 3
A pairwise scatter plot of the quality control metrics collected by scPipe for the mouse blood cell dataset.
Sample-specific metrics include the total read count, the number of genes detected and the proportion of non-ERCC or non-mitocondrial reads. The good quality and outlier samples detected by scPipe’s automatic outlier detection method are indicated in each panel by a different colour.