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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics

Fig 4

Example of optimized coarse states for arginine overlaid on the PDB distribution of the rotamer angles χ1 and χ2.

Each of the six coarse states contains only a single fine state that has high probability, so that the variance of dihedral angles within each coarse state is small.

Fig 4

doi: https://doi.org/10.1371/journal.pcbi.1006342.g004