Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks
Fig 9
Dynamic batch effect scenario.
Two subpopulations, in blue color, migrate in a time series fashion (begins in sample 1, and progresses through samples 2, 3, 4, and 5). In this simulation data, the dimensions are named V1, V2,…, V5, and V1 and V2 are the informative dimensions. The two sample subpopulations almost converge by mean shifts through the time series. The bottom right panel shows the subpopulations pooled into one figure; the colors denote subpopulations.