Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
Fig 7
Bayesian tree based on [Cyto_PI_60-more] dataset.
It contains peptides with a length higher than 60 amino acids obtained from cytoplasmic proteins with an isoelectric point between 4.5 and 5.5. Bayesian analysis was performed in two independent runs using four Markov chains and 1,000,000 generations [[58]. A majority-rule consensus tree (50%) was obtained after discarding the initial 25% of the trees and only support above 60% is shown. The leaf labels refer to the current NCBI nomenclature, whereas the BCG groups represent the recently revised names [12].