Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
Fig 3
Whole proteome-based phylogenomic tree, including species and subspecies cluster information.
This analysis was based on the GBDP algorithm and rooted with Bacillus subtilis. Numbers above branches are greedy-with-trimming pseudo-bootstrap support values from 100 replicates [13] and only support above 60% is shown. The leaf labels refer to the current NCBI nomenclature, whereas the BCG groups represent the recently revised names [12].