MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
Table 1
For twelve shotgun metagenome samples [16], we report (a) the number of reads, (b) wall-clock time required to align the reads against NCBI-nr using DIAMOND, (c) the number of matches obtained, (d) the number of reads that have at least one alignment and (e) the time required to run Meganizer to perform taxonomic and functional classification of all reads.
The total wall-clock time is 67 hours on a single server with 32 cores.