CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing
Fig 7
Precion and recall of absolute copy number calls.
CNV calls obtained using each sequencing-based method are compared to those determined by array CGH to calculate precision and recall under several criteria for the C0902 cell line sample. Columns show detection of each copy number level versus the neutral hexaploid state. Rows show criteria for comparison: all CNVs, CNVs larger than 5 MB, CNVs smaller than 5MB, all CNV basepairs. Each subplot shows the calculated precision and recall of CNVkit, CopywriteR and CONTRA with each supported reference.