Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression
Fig 4
HaMMLET’s speedup as a function of the average compression during sampling.
As expected, higher compression leads to greater speedup. The non-linear characteristic is due to the fact that some overhead is incurred by the dynamic compression, as well as parts of the implementation that do not depend on the compression, such as tallying marginal counts.