Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees
Fig 9
Interior node host assignments (left) and transmission trees (right) consistent with the phylogeny and the epidemiologic data.
Dashed lines on the right indicate transmissions fixed by the phylogeny to the left. Dotted lines indicate that the infector of an individual depends on a choice of hosts in the phylogeny. At the top, K infects C, C infects P, and either K or L infects E. At the bottom, O infects C, either O or C infects P, and either K or L infects E. There are six possible transmission trees—two on top and four on the bottom.