Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach
Fig 3
Best approximation of the RNA bound form obtained by biased fragment docking and chain-propensity filtering.
The bound form of the RNA in 1B7F (A) or 1CVJ (B) is represented as white sticks, and the best approximation for each fragment as lines, colored from blue to orange by green for frag1 to frag6. In both cases, frag5 and frag6 are best approximated by the same docking pose.