High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
Fig 5
Prevalence of antibiotic resistance across bacterial isolate genomes.
Phylogenetic tree of bacterial genomes from IMG [24] overlaid with presence/absence of ShortBRED antibiotic resistance protein families. The outermost ring indicates the share of genes in each species’ genome that mapped to any of the AR protein families. This figure was produced using GraPhlAn [27].