ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Figure 5
ClonalFrameML analysis of recombination in S. aureus based on 110 genomes representing carriage and reference isolates mapped to MRSA252.
Reconstructed substitutions (white vertical bars) are shown for each branch of the ML tree. Grey areas represent non-core regions of the MRSA252 genome. Dark blue horizontal bars indicate recombination events detected by the analysis.