Protein-Protein Docking with Dynamic Residue Protonation States
Figure 4
Distribution curves of interface RMSDs (Irmsd) and fraction of recovered native contacts (fnat) for the docking models.
(A) Irmsd distribution curve of the lowest-Irmsd models generated using pHDock (orange) and RosettaDock (grey). (B, C) Irmsd and fnat distribution curve for the top-ranked models according to interface scores (Isc) for each protein complex. The distribution curves are generated after independent sorting of the pHDock and RosettaDock models based on (A, B) increasing Irmsd values and (C) decreasing fnat.