Integrative Multi-omics Module Network Inference with Lemon-Tree
Fig 1
Flow chart for integrative module network inference with Lemon-Tree.
This figure shows the general workflow for a typical integrative module network inference with Lemon-Tree. Blue boxes indicate the pre-processing steps that are done using third-party software such as R or user-defined scripts. Green boxes indicate the core module network inference steps done with the Lemon-Tree software package. Typical post-processing tasks (orange boxes), such as GO enrichment calculations, can be performed with Lemon-Tree or other tools. The Lemon-Tree task names are indicated in red (see main text for more details).